This function imports the *-ltrdigest_tabout.csv file generated by LTRdigest.
read.tabout(tabout.file)
| tabout.file | path to the tabout.csv file generated by the
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Hajk-Georg Drost
# example tabout file generated by LTRdigest for A thaliana tabout.file <- system.file("TAIR10_chr_all-ltrdigest_tabout.csv",package = "LTRpred") # import tabout file imported.tabout <- read.tabout(tabout.file) # look at the imported tabout file. head(imported.tabout) #> # A tibble: 6 × 30 #> element_start element_end element_length sequence lLTR_start lLTR_end #> <int> <int> <int> <chr> <int> <int> #> 1 149500 155909 6410 1_CHROMOSOME_dum… 149500 149661 #> 2 249531 259127 9597 1_CHROMOSOME_dum… 249531 249713 #> 3 428932 438092 9161 1_CHROMOSOME_dum… 428932 429046 #> 4 2659374 2663971 4598 1_CHROMOSOME_dum… 2659374 2659694 #> 5 3357954 3363283 5330 1_CHROMOSOME_dum… 3357954 3358064 #> 6 3780765 3785720 4956 1_CHROMOSOME_dum… 3780765 3781204 #> # … with 24 more variables: lLTR_length <int>, rLTR_start <int>, #> # rLTR_end <int>, rLTR_length <int>, lTSD_start <int>, lTSD_end <int>, #> # lTSD_motif <chr>, rTSD_start <int>, rTSD_end <int>, rTSD_motif <chr>, #> # PPT_start <int>, PPT_end <int>, PPT_motif <chr>, PPT_strand <chr>, #> # PPT_offset <int>, PBS_start <int>, PBS_end <int>, PBS_strand <chr>, #> # tRNA <chr>, tRNA_motif <chr>, PBS_offset <int>, tRNA_offset <int>, #> # PBS/tRNA_edist <int>, protein_domain <chr>