Import sequences of predicted LTR transposons generated by LTRharvest, LTRdigest, or LTRpred.

read.seqs(seq.file, program = "LTRharvest")

Arguments

seq.file

path to fasta file storing the sequences of predicted LTR transposons generated by LTRharvest, LTRdigest, or LTRpred.

program

program used to generate the LTR transposons specified in seq.file, e.g. program = "LTRpred", program = "LTRdigest", or program = "LTRharvest".

Author

Hajk-Georg Drost