Quantify the genomic loci space for multiple genomes, proteomes or Repeat Masker annotation files

Quantification of the genomic loci space (= total length of all annotated genomic features) within a given genome of interest.

quant.space.meta(folder, type = "proteome")

Arguments

folder	path to the folder storing the genomes, proteomes, or Repeat Masker files of interest.
type	The following genomic features can be quantified: type = 'cds': coding sequence files in fasta format (see read_genome). type = 'proteome': proteome files in fasta format (see read_proteome). type = 'rm': Repeat Masker annotation files in fasta format (see read_rm).

Author

Hajk-Georg Drost