This function formats the LTR prediction data.frame
generated by LTRpred
to a GRages
object.
pred2GRanges(LTR.data, similarity.threshold = 95)
LTR.data | the LTR prediction |
---|---|
similarity.threshold | the LTR similarity threshold that shall be used to define young and old retrotransposons. |
The GRages
object is defined by the following columns:
chromosome
start
end
strand
element_name
ltr_similarity
orfs
age
Hajk-Georg Drost