R/gridPlotAssemblyVersions.R
gridPlotAssemblyVersions.Rd
Compare the abundance of retrotransposon predictions between different genome assembly versions. This way a genome assembly version bias can be either ruled out or considered for subsequent conclusions.
gridPlotAssemblyVersions( data, quality.filter = FALSE, text.size = 18, xlab = "LTR similarity", ylab = "LTR retrotransposon count", main.text = "", y.ticks = 6, sim = 70, n.orfs = 0 )
data | prediction files returned by |
---|---|
quality.filter | shall false positives be filtered out as much as possible or not. |
text.size | size of x-axis, y-axis, and title text. |
xlab | x-axis label. |
ylab | y-axis label. |
main.text | title text. |
y.ticks | number of ticks that shall be drawn on the y-axis. |
sim | If |
n.orfs | If |
Hajk-Georg Drost