LTRpred.meta
resultsR/genome.summary.R
genome.summary.Rd
Generating genome summary files for LTRpred.meta
results
genome.summary( genome.folder, ltrpred.meta.folder, file.name, sim = 70, cut.range = 2, quality.filter = TRUE, n.orfs = 0, strategy = "default" )
genome.folder | a file path to a folder storing the genome assembly files in fasta format that
were used to generate |
---|---|
ltrpred.meta.folder | a file path to a folder storing |
file.name | name of the output file. |
sim | LTR similarity threshold. Only putative LTR transposons that fulfill this LTR similarity threshold will be retained. |
cut.range | similarity interval size. |
quality.filter | shall a quality filter to remove possible false positive predictions be applied? |
n.orfs | minimum number of open reading frames a predicted retroelement shall possess. |
strategy | quality filter strategy. Options are
|
Generating genome summary files for LTRpred.meta
results.
Hajk-Georg Drost